The antenna heights of all OS Net stations are measured vertically from the station marker to the Antenna Reference Point (ARP) for each antenna, which is usually the base of the antenna mount.
This height is the one given in the RINEX file header. The offset from the ARP to the phase centre is then added to the ARP height (usually in the processing software) to give the height of the phase centre above the ground marker.
The main phase centre offset component is vertical (up) but there are also small horizontal offsets (north and east) that can be applied. There are actually two phase centres in an antenna – one for the L1 frequency and the other for L2, and each phase centre has a different offset.
In addition to the main offsets there are additional small offsets given as tables of satellite azimuth and elevation dependant corrections. All offsets are usually delivered in the standard ANTEX format.